COVID-19 Updates

Updates on Vector Institute Facilities & Operations

Public Health Resources

Vector Faculty Initiatives to Fight COVID-19

COVID-19 AI Research Tools

 

Vector Institute Closing Normal Operations Effective Tuesday March 17th

The Vector Institute is closing normal operations in suite 710, MaRS Centre, West Tower effective Tuesday March 17th to emphasize social distancing as recommended by public health authorities.

Beginning Tuesday and until further notice, researchers – including all faculty members, affiliates, postdoctoral fellows, research scientists, and students – should not be entering the suite without an approved appointment and escort from a member of the professional staff.

Any member of the professional staff that requires access to the Vector suite should seek approval beforehand.

Staff and researchers are asked to work from home.

We expect to remain closed for as long as these emergency orders continue.

Precautions remain in place within the suite to protect health and safety.

ATTENTION VISITORS:

If you have a fever and/or new onset of cough or difficulty breathing OR

In the 14 days before symptom onset, you have:

  • been to a COVID-19 impacted area, or
  • you have been in close contact with a confirmed or probable case of COVID-19, or
  • you have been in close contact with a person with acute respiratory illness who has been to a COVID-19 impacted area,

please delay your visit AND contact your health care provider, or Telehealth Ontario (1-866-797-0000)

Upcoming Vector Events

Status of upcoming events:
https://vectorinstitute.ai/#events

If you have questions about an upcoming event, please contact:
events@vectorinstitute.ai

Resources

Canada/Ontario/Toronto

WHO

US CDC:

Vector COVID-19 research

Where appropriate data is available, Vector researchers are contributing to a number initiatives to fight COVID-19. 

Vector has also issued a call to its industry sponsors in an effort to create an inventory of talent such as data scientists or engineers that may be available to contribute to related research. 

***This list will be updated regularly

  • FLATTEN is a website that enables individuals to self-report symptoms, view an infection heatmap, and identify regions that have a high density of immunosuppressed and elderly individuals with a goal of helping the government to “flatten the curve” of COVID-19 spread. Vector Chief Scientific Advisor Geoffrey Hinton and Vector Faculty Member Marzyeh Ghassemi were advisers on the project. 
  • Developed by Vector students Duncan Forster and John Giorgi and their advisor Vector Faculty Member Bo Wang, CiteNet.io, is a scientific paper search and visualization tool that indexes the pre-print servers bioRxiv and medRxiv by paper title using NLP. It is updated daily.
  • Screening and risk stratification of COVID patients with CT and/or X-Ray dataWorking with Joseph Paul Cohen at MILA, Vector Faculty Member Marzyeh Ghassemi is co-leading this project which aims to develop a chest X-ray image classifier for diagnosing COVID-19 from patient chest X-ray images using deep neural networks. This could help as a side tool for resource allocation. 
  • AI-driven development of small molecule therapeutics for SARS-CoV-2 – Vector Faculty Member Alan Aspuru-Guzik is leading a project to identify repurposed and small-molecule novel therapeutic candidates to target SARS-COV-2. 
  • Scaling up therapeutic molecules, new soaps and coatings, and inhibitors for its reproduction machinery – Aspuru-Guzik is also leading a project to use active learning models to find the most effective surfactants and surface coatings for reducing viral lifetimes. The goal is to reduce their lifetimes to under one hour.
  • CryoSPARC, developed by Vector Faculty Member David Fleet and some of his students, was used by US researchers to create the first 3D atomic scale map of the part of the virus that attaches to and infects human cells.
  • Vector Faculty Member Bo Wang and local drug discovery company Cyclica, are using the company’s MatchMaker technology for AI-enabled drug repurposing for COVID-19, in hopes of uncovering non-obvious relationships between all existing drugs and antiviral activity.
  • Vector Faculty Affiliate Jimmy Lin and NYU’s Kyunghyun Cho built Neural Covidex, NLP and IR tools for AI2’s COVID-19 Open Research Dataset (CORD-19). Essentially search tools for information about COVID-19. 
  • Vector Faculty Member Frank Rudzicz is working on a COVID Black Box to remotely support healthcare workers with COVID-19 patients in ICUs and assessment centres across Toronto and Ontario. Using video cameras, deep learning models, and human clinical analysts, the team will analyze 1) hand hygiene, 2) adherence to personal protective equipment protocols, and 3) breaches in safety and system vulnerability in Ontario.
  • Vector Faculty Member Graham Taylor is working with the Arrell Food Institute and Dalhousie Agri-food Analytics lab to perform a short-term forecast of food prices based on the impact of COVID-19. 

COVID-19 research tools

The global scientific community is working diligently to tackle the most immediate scientific questions related to COVID-19. Within this effort is a role for the world’s AI experts, including the extended Vector research community, to help find answers to some of the most vexing problems related to the virus. 

Below is an incomplete list of funding, open-source research and data sets, and other digital tools to help researchers in their work. 

***This list will be updated. If you have relevant links please send to media@vectorinstitute.ai along with a short explanation of the work. 

  • The government of Canada will invest $275 million in additional funding to enhance research capacity on vaccine and antiviral development and clinical trials, including in Canada. This is on top of the $27 million in already announced funding. 
  • The White House issued a call to action to the tech community to develop techniques that can answer scientific questions related to COVID-19. Along with a coalition of leading research groups, it has released the COVID-19 Open Research Dataset (CORD-19), a resource of over 29,000 scholarly articles, including over 13,000 with full text, about COVID-19, SARS-CoV-2, and related coronaviruses. This freely available dataset is provided to the global research community to apply recent advances in natural language processing and other AI techniques to generate new insights in support of the ongoing fight against this infectious disease.
  • Staff at Element AI have developed a Corona calculator, a tool that helps to visualize the impact of social distancing
  • DeepMind has released structure predictions of several under-studied proteins associated with SARS-CoV-2, the virus that causes COVID-19 created with their  AlphaFold system. The predictions have not been experimentally verified, but may contribute to the understanding of how the virus functions. 
  • In their response to COVID, researchers in Taiwan combined health insurance data with immigration/customs data as a foundation and then layered travel/medical history to define and triage individual risk.
  • WangLabs have developed CiteNet.io, a scientific paper search and visualization tool that indexes the pre-print servers bioRxiv and medRxiv by paper title using NLP. It is updated daily. 
  • Novel Corona Virus 2019 Dataset – day level information on COVID-19 affected cases
  • An open database of COVID-19 cases with chest X-ray or CT images.
  • Public Health Ontario has uploaded genomic data for the virus to NextStrain, which offers real-time tracking of pathogen evolution. 
  • A small drug repurposing study.
  • A map of COVID-19 cases in Canada put together by students from the Dalla-Lana School of Public Health.  
  • GISAID: Global viral genome sequences and epidemiological data.
  • Coronavirus Tech Handbook was put together by a group of physicians and techies around the globe in order to populate a centralized open resource. 
  • The proximal origin of SARS-CoV-2” from Nature Medicine.
  • FLATTEN is a website that enables individuals to self-report symptoms, view an infection heatmap, and identify regions that have a high density of immunosuppressed and elderly individuals with a goal of helping the government to “flatten the curve” of COVID-19 spread.
  • #Howismyflattening  is a group of physicians, medical students, computational health researchers, designers, and epidemiologists rapidly filtering and presenting emergent COVID-19 data to help Ontarians #FlattenTheCurve. They connect experts and present data in an easy-to-digest, actionable way to help Ontarians and Public Health Leaders act decisively as evidence grows and time ticks by.
  • The NRC’s COVID-19 Challenge Program brings together a national network of researchers and scientific facilities to address pressing needs and challenges. Composed of teams of government, academic, and private-sector partners it will address a range of medium-term Public Health Agency of Canada and Health Canada needs.
  • COVID-19 genomic information being uploaded to GISAID.
  • The British Society of Thoracic Imaging (BSTI) have built a free to use, anonymised and encrypted online portal to upload and refer imaging of patients with either confirmed or suspected COVID-19.
  • Coronavirus: The Hammer and the Dance – What the next 18 months can look like, if leaders buy us time.
  • InFact’s Coordinated global research response.
  • The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak” from Science
  •  COVID-Net is a convolutional neural network for COVID-19 detection via chest radiography created by DarwinAI’s research team, in conjunction with the University of Waterloo. DarwinAI is open sourcing it to the research community and giving academics access to their explainability platform so they can contribute to the project. 
  • Kaggle COVID-19 Open Research Dataset Challenge.
  • CIFAR is issuing a targeted call for AI and COVID-19 interdisciplinary research collaborations to spark innovative, high-risk/high-reward ideas and projects. CIFAR’s Catalyst Program provides seed funding (up to $15,000 CAD) for time-limited activities. The deadline for applications is April 3, 2020 11:59 EDT.
  • Mapping the landscape of artificial intelligence applications against COVID-19,” a white paper, co-authored by Sasha Luccioni from MILA.
  • U of T is launching an action fund to support research that will make near-term contributions to the fight against COVID-19. The university has already invested $5 million and is aiming to match that amount with a call for donations. They have issued a call to faculty for research proposals by March 30. 
  • The White House announced the launch of the COVID-19 High Performance Computing Consortium to provide COVID-19 researchers worldwide with access to the world’s most powerful high performance computing resources that can significantly advance the pace of scientific discovery in the fight to stop the virus.
  • A call-to-action from Myant to work together to enable remote screening and a connected care solution to COVID-19 for vulnerable populations.
  • #Hackthecurve is a new challenge from the DMZ at Ryerson. Over a two-week period, teams of up to five participants will compete for $10,000 in cash prizes by seeing who can develop an innovative technology solution to help flatten the pandemic’s curve.
  • Element AI has released  a beta of a free search platform to help workers find answers and patterns in research papers by locating relevant work across thousands of published papers.
  • COVID-19 Archive is a collection of selected COVID-19 related news articles, categorized by date.
  • AI Against COVID-19 Canada is a special task force, led by researchers from CIFAR, Mila – Quebec Artificial Research Institute, the Vector Institute ,and Amii, aiming to map and coordinate AI projects in Canada that can help solve the COVID-19 outbreak and limit its impact on society. 
  • Ontario Centres of Excellence: COVID-19 Collaboration Platform – for those with a COVID solution-seeking collaborators or those with a complete solution.
  • The Digital Technology Supercluster Call for COVID-19 Solutions.
  • CODEVID-19 is an Edmonton-based, grassroots hackathon building rapid solutions to problems facing all citizens during the pandemic. Produced by the Dev Edmonton Society, the hackathon runs until the end of April, with weekly prizes awarded for app submissions. More than 1,500 developers and domain experts from 10 countries have already joined.  
  • The SOSCIP COVID-19 Response aims to provide rapid access to high-performance computing (HPC) resources, fast-tracking compute space for collaborators committed to responding to COVID-19. 
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